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Species belonging to selected taxon:
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
ABOUT THIS RECORD
ID:
MNEST054641
species:
Saccharum officinarum
miRNA family:
MIR172
source:
PMRD, original name:
sof-miR172a
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGAATCCTGATGATGCTGCAG
miRNA*
GTTGCATCTCCGGTTTCTCA
mismatches:
5
bulges:
1
View larger
pre-miRNA
AAGC
GTTGCATCTCCGGTTTCTCA
CCAACCATTATTACCCCCAACCAAGAAGCGTCTGTACCGAACCACACCCACCGGTGGCGGCGCATGGCCAGCCCGC
CACCATTTCACCGTTCAGCTCAGACGCCGTCTCCACTCTCCAGCTCAACAGGAGGACTGGGGGAGTCTGTCAGGCGGTTGGGGGGAAGCGGAGCTGCTGG
TAGCCGAAGAACACTTGCCGGGGGCCACCGGACGGCACGCTGCCGGCGGCTGTGGCCGCGTCCACGCCGGTGGCGGTAG
AGAATCCTGATGATGCTGCAG
dot-bracket secondary structure
....
((.(((((((.((.((((((
((..(((((....(((((((((.....(((((((..(.((((..........((((((((.((.......))))))
))))........)))).)..))))))).((((..((((((((((((.....)))..)).))))))).....)))))))))))))...(((((((((((((
((((..(((....)))((((.((....))...))))..)))))))))))))....)))).........))))).))).)
)))).)).)).))))).))..
SIMILARITIES
miRBase
bdi-MIR172d
:
0.00006
PMRD
osa-miR172p
:
0.000001
microPC
miR172
:
0.000001
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
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